August 15th, 2011, 4:45 pm
I'm a big fan of Good Reader, though I've only used it on my iPad. Plenty of ways to get your pdfs on there and syncing works OK (bit slow). It works well with Dropbox, which is a must for me.. I only do light annotations, so I can't rate how well GR is in this area. Give it a shot, especially if you organize your files in plain directories. I think an app called Stanza uses a library/metadata system.