Hi, using eurodollar option volatilities is preferable, obviously, for consistency reasons. But in practice cap/floor vols are fine, as it is often the case that these vols are marked off of eurodollar vols anyway. The vol surface is often a hodge podge in that area, but if you are careful about this, this is where a lot of the money is in that space.
There is not much point going crazy with modeling the adjustment, although it does make sense to bring in some skew and correlations. Hence a skew BGM model is good for this. The problem with eurodollar convexity is that it's not really a textbook case about the futures variation margin, but more complex than that.
As often, I don't agree with bearish, who might be sitting too far away from the desk too deeply involved in studying written quant finance. That is what quants do I guess